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Showing posts with the label Genome Browser

Genome Viewers/Editors - Three of the Best

A number of online and offline genome are viewers available, each with it’s own set of pros and cons. Here is an overview three. Artemis Artemis is a genome viewer available from Sanger Institute. Its a java based tool with a 3-paned interface window that depicts the genome at various resolutions. Alternating between the different resolutions is a bit tricky but once you get a hold of it shouldn’t be difficult. There is a also search tool that allows your to track down the particular feature that you’re looking for. A great feature of Artemis is that it allows you to edit the sequence annotations and features. Although the tool isn’t perfect and is a bit finicky at times, it gets the job done. Artemis supports the most common filetypes -EMBL, GENBANK, FASTA or raw format. Extra sequence features can be added in in EMBL, GENBANK or GFF format. The best thing I like about Artemis is that there is a web version as well as an offline version, which means once you get used to it you ca...

Free UCSC Genome Browser Training

OpenHelix is providing free UCSC Genome Browser training for Institutions. You can apply for this at http://www.openhelix.com/seminars . "The three and half hour introductory tutorial will cover the topics needed to effectively use this powerful, free, publicly-accessible tool, including: basic functionality of Genome Browser searching and BLAT use, Table Browser use, creating and using Custom Tracks, and an introduction to the Gene Sorter. Participants will receive slide hand-outs, exercises, and a UCSC Genome Browser and Table Browser Quick Reference Cards."